How to Transpose Data Frame in R

Transposing means switching rows to columns and columns to rows. It is a common operation in the matrix. 

The above figure shows that column names from the original data frame have become row names, and the first column values of the original data frame have become column names. Everything has been switched.

Here are two main ways to transpose a data frame in R:

1. Using t() (Quick for small dataset)
2. Using data.table() (Efficient for large datasets)

Method 1: Using t()

The t() function is primarily used for matrices, but it can also be applied to a data frame. The t() method first converts the data frame into a matrix, which may coerce all data to a single type (e.g., character), and then converts it back to the data frame.

While transposing, you need to keep in mind the following things:

1. By default, the t() function does not preserve the original data type of the data frame. If data types are mixed, t() will convert into a character. To fix this issue, we should use type.convert() or as.numeric() selectively to restore numeric types after transposition.
2. We need to explicitly set column names using colnames(), setnames() (for data.table), or rename_with() (dplyr).
3. We should use stringsAsFactors = FALSE when creating data frames to prevent unwanted factor conversion.
4. While converting, you might encounter NA values. To fix that, we must check and handle NA values using tidyr::replace_na() or dplyr::mutate().
5. Ensure row names (original columns) and column names (original rows) are correctly assigned after transposition.

Here is a code example:

df <- data.frame(
  name = c("Millie", "Yogita", "KMJ"),
  score = c(90, 95, 77),
  subject = c("Biology", "Biology", "Biology"),
  grade = c(12, 12, 11),
  stringsAsFactors = FALSE # Prevents automatic factor conversion
)

print("Before transposing:")
print(df)

# Transpose and convert to data frame
df_transposed <- as.data.frame(t(df), stringsAsFactors = FALSE)

# Set column names using the first row
colnames(df_transposed) <- df_transposed[1, ]
df_transposed <- df_transposed[-1, ]

# Automatically convert numeric columns while keeping text columns unchanged
df_transposed <- type.convert(df_transposed, as.is = TRUE)
print("After transposing:")
print(df_transposed)

Output

If you compare the output with the original data frame, it remains sensible, and you can analyze it as needed. This approach is helpful when working with a small dataset, but it becomes slow as the dataset grows larger.

Method 2: Using data.table()

The data.table package provides a more efficient transpose() function that handles names and types more flexibly.

Here are the steps to follow:

1. Transpose the data frame using the data.table::transpose().
2. Convert the transposed data frame into a data.table using data.table() function.
3. Set the column names using the first row.
4. Convert numeric columns back to proper types.

However, you need to install the data.table() package first, and then load it. Check out the complete code.

library(data.table)

# Source data frame
df <- data.frame(
  name = c("Millie", "Yogita", "KMJ"),
  score = c(90, 95, 77),
  subject = c("Biology", "Biology", "Biology"),
  grade = c(12, 12, 11),
  stringsAsFactors = FALSE
)

print("Before transposing:")
print(df)

# Converting to data.table and transpose
df_transposed <- as.data.table(transpose(df))

# Set column names using the first row
setnames(df_transposed, as.character(df_transposed[1, ]))
df_transposed <- df_transposed[-1, ] # Remove first row after setting column names

# Convert numeric columns back to proper types
df_transposed <- df_transposed[, lapply(.SD, type.convert, as.is = TRUE)]

print("After transposing:")
print(df_transposed)

Output

The data.table::transpose() function is beneficial for large datasets because it is optimized for performance.

That’s all!